Software
Code and tools released by the MALL Lab, with links to each repository and the associated publication.
Software associated with publications
Vaginal bacterial subtyping using machine learning for enhanced classification of bacterial vaginosis.
Fecal microbiome analysis in patients with metabolic syndrome and type 2 diabetes.
MALL submissions to the Microbiome Preterm Birth DREAM Challenge, crowdsourcing ML approaches to advance preterm birth research.
Machine learning analysis of the infant gut microbiome to identify influential species in type 1 diabetes.
Project code and tooling
Explainable graph convolutional networks for innovation in precision oncology and drug resistance in cancer.
Docker image for molecular docking experiments with AutoDock Vina, used across the RePo-SUDOE project platforms.